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Time-Delay Estimation in State and Output Equations of Nonlinear Systems Using Optimal Computational Approach

Published in Journal of Optimization Theory and Applications, 2018

Recommended citation: Abooshahab, M. A., Ekramian, M., Ataei, M., & Ebrahimpour-Boroojeny, A. (2019). Time-delay estimation in state and output equations of nonlinear systems using optimal computational approach. Journal of Optimization Theory and Applications, 180, 1036-1064.
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GTED: Graph traversal edit distance

Published in RECOMB 2018, 2018

Recommended citation: Boroojeny, A. E., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2018). GTED: Graph traversal edit distance. In Research in Computational Molecular Biology: 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings 22 (pp. 37-53). Springer International Publishing.
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Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta

Published in Biology of Reproduction, 2019

Recommended citation: Murtazina, D. A., Arreguin-Arevalo, J. A., Cantlon, J. D., Ebrahimpour-Boroojeny, A., Shrestha, A., Hicks, J. A., ... & Clay, C. M. (2020). Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta. Biology of Reproduction, 102(1), 156-169.
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Graph traversal edit distance and extensions

Published in Journal of Computational Biology, 2020

Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). Graph traversal edit distance and extensions. Journal of Computational Biology, 27(3), 317-329.
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PyGTED: Python Application for Computing Graph Traversal Edit Distance

Published in Journal of Computational Biology, 2020

Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). PyGTED: Python application for computing graph traversal edit distance. Journal of Computational Biology, 27(3), 436-439.
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BPPart: RNA-RNA interaction partition function in the absence of entropy

Published in WABI 2021, 2021

Recommended citation: Ebrahimpour-Boroojeny, A., Rajopadhye, S., & Chitsaz, H. (2021). BPPart: RNA-RNA interaction partition function in the absence of entropy. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021).
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Spectrum Extraction and Clipping for Implicitly Linear Layers

Published in AISTATS 2024, 2024

Recommended citation: Ebrahimpour Boroojeny, A., Telgarsky, M. & Sundaram, H.. (2024). Spectrum Extraction and Clipping for Implicitly Linear Layers. Proceedings of The 27th International Conference on Artificial Intelligence and Statistics, in Proceedings of Machine Learning Research 238:2971-2979.
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Intracellular spatial transcriptomic analysis toolkit (InSTAnT)

Published in Nature Communications, 2024

Recommended citation: Kumar, A., Schrader, A. W., Aggarwal, B., Boroojeny, A. E., Asadian, M., Lee, J., ... & Sinha, S. (2024). Intracellular spatial transcriptomic analysis toolkit (InSTAnT). Nature communications, 15(1), 7794.
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Training Robust Ensembles Requires Rethinking Lipschitz Continuity

Published in ICLR 2025, 2025

Recommended citation: Ebrahimpour-Boroojeny, A., Sundaram, H., & Chandrasekaran, V. (2024). LOTOS: Layer-wise Orthogonalization for Training Robust Ensembles. arXiv preprint arXiv:2410.05136.
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qBio 2019 Conference

Published: August 02, 2019

Neurips 2023 Workshop on Mathematics of Modern Machine Learning

Published: December 16, 2023

The AAAI-25 Workshop on Artificial Intelligence for Cyber Security (AICS)

Published: March 03, 2025

LOTOS: Layer-wise Orthogonalization for Training Robust Ensembles

Algorithms - Theory and Practice (CS320)

Teaching Assistant, Colorado State University, Computer Science Department, 2020

Introduction to Analysis of Algorithms (CS420)

Teaching Assistant, Colorado State University, Computer Science Department, 2021

Applied Machine Learning (CS441)

Teaching Assistant, University of Illinois Urbana-Champaign, Computer Science Department, 2024

Machine Learning (CS446)

Teaching Assistant, University of Illinois Urbana-Champaign, Computer Science Department, 2024