Published in ICLR 2025, 2025
Recommended citation: Ebrahimpour-Boroojeny, A., Sundaram, H., & Chandrasekaran, V. (2024). LOTOS: Layer-wise Orthogonalization for Training Robust Ensembles. arXiv preprint arXiv:2410.05136.
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Published in AISTATS 2024, 2024
Recommended citation: Ebrahimpour Boroojeny, A., Telgarsky, M. & Sundaram, H.. (2024). Spectrum Extraction and Clipping for Implicitly Linear Layers. Proceedings of The 27th International Conference on Artificial Intelligence and Statistics, in Proceedings of Machine Learning Research 238:2971-2979.
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Published in WABI 2021, 2021
Recommended citation: Ebrahimpour-Boroojeny, A., Rajopadhye, S., & Chitsaz, H. (2021). BPPart: RNA-RNA interaction partition function in the absence of entropy. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021).
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Published in RECOMB 2018, 2018
Recommended citation: Boroojeny, A. E., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2018). GTED: Graph traversal edit distance. In Research in Computational Molecular Biology: 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings 22 (pp. 37-53). Springer International Publishing.
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Published in Nature Communications, 2024
Recommended citation: Kumar, A., Schrader, A. W., Aggarwal, B., Boroojeny, A. E., Asadian, M., Lee, J., ... & Sinha, S. (2024). Intracellular spatial transcriptomic analysis toolkit (InSTAnT). Nature communications, 15(1), 7794.
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Published in Journal of Computational Biology, 2020
Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). PyGTED: Python application for computing graph traversal edit distance. Journal of Computational Biology, 27(3), 436-439.
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Published in Journal of Computational Biology, 2020
Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). Graph traversal edit distance and extensions. Journal of Computational Biology, 27(3), 317-329.
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Published in Biology of Reproduction, 2019
Recommended citation: Murtazina, D. A., Arreguin-Arevalo, J. A., Cantlon, J. D., Ebrahimpour-Boroojeny, A., Shrestha, A., Hicks, J. A., ... & Clay, C. M. (2020). Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta. Biology of Reproduction, 102(1), 156-169.
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Published in Journal of Optimization Theory and Applications, 2018
Recommended citation: Abooshahab, M. A., Ekramian, M., Ataei, M., & Ebrahimpour-Boroojeny, A. (2019). Time-delay estimation in state and output equations of nonlinear systems using optimal computational approach. Journal of Optimization Theory and Applications, 180, 1036-1064.
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