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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
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Blog Post number 4
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
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Portfolio item number 2
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publications
Time-Delay Estimation in State and Output Equations of Nonlinear Systems Using Optimal Computational Approach
Published in Journal of Optimization Theory and Applications, 2018
Recommended citation: Abooshahab, M. A., Ekramian, M., Ataei, M., & Ebrahimpour-Boroojeny, A. (2019). Time-delay estimation in state and output equations of nonlinear systems using optimal computational approach. Journal of Optimization Theory and Applications, 180, 1036-1064.
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GTED: Graph traversal edit distance
Published in RECOMB 2018, 2018
Recommended citation: Boroojeny, A. E., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2018). GTED: Graph traversal edit distance. In Research in Computational Molecular Biology: 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings 22 (pp. 37-53). Springer International Publishing.
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Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta
Published in Biology of Reproduction, 2019
Recommended citation: Murtazina, D. A., Arreguin-Arevalo, J. A., Cantlon, J. D., Ebrahimpour-Boroojeny, A., Shrestha, A., Hicks, J. A., ... & Clay, C. M. (2020). Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta. Biology of Reproduction, 102(1), 156-169.
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Graph traversal edit distance and extensions
Published in Journal of Computational Biology, 2020
Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). Graph traversal edit distance and extensions. Journal of Computational Biology, 27(3), 317-329.
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PyGTED: Python Application for Computing Graph Traversal Edit Distance
Published in Journal of Computational Biology, 2020
Recommended citation: Ebrahimpour Boroojeny, A., Shrestha, A., Sharifi-Zarchi, A., Gallagher, S. R., Sahinalp, S. C., & Chitsaz, H. (2020). PyGTED: Python application for computing graph traversal edit distance. Journal of Computational Biology, 27(3), 436-439.
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BPPart: RNA-RNA interaction partition function in the absence of entropy
Published in WABI 2021, 2021
Recommended citation: Ebrahimpour-Boroojeny, A., Rajopadhye, S., & Chitsaz, H. (2021). BPPart: RNA-RNA interaction partition function in the absence of entropy. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021).
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Spectrum Extraction and Clipping for Implicitly Linear Layers
Published in AISTATS 2024, 2024
Recommended citation: Ebrahimpour Boroojeny, A., Telgarsky, M. & Sundaram, H.. (2024). Spectrum Extraction and Clipping for Implicitly Linear Layers. Proceedings of The 27th International Conference on Artificial Intelligence and Statistics, in Proceedings of Machine Learning Research 238:2971-2979.
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Intracellular spatial transcriptomic analysis toolkit (InSTAnT)
Published in Nature Communications, 2024
Recommended citation: Kumar, A., Schrader, A. W., Aggarwal, B., Boroojeny, A. E., Asadian, M., Lee, J., ... & Sinha, S. (2024). Intracellular spatial transcriptomic analysis toolkit (InSTAnT). Nature communications, 15(1), 7794.
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Training Robust Ensembles Requires Rethinking Lipschitz Continuity
Published in ICLR 2025, 2025
Recommended citation: Ebrahimpour-Boroojeny, A., Sundaram, H., & Chandrasekaran, V. (2024). LOTOS: Layer-wise Orthogonalization for Training Robust Ensembles. arXiv preprint arXiv:2410.05136.
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talks
qBio 2019 Conference
Published:
The AAAI-25 Workshop on Artificial Intelligence for Cyber Security (AICS)
Published:
LOTOS: Layer-wise Orthogonalization for Training Robust Ensembles
teaching
Algorithms - Theory and Practice (CS320)
Teaching Assistant, Colorado State University, Computer Science Department, 2020
Introduction to Analysis of Algorithms (CS420)
Teaching Assistant, Colorado State University, Computer Science Department, 2021
Applied Machine Learning (CS441)
Teaching Assistant, University of Illinois Urbana-Champaign, Computer Science Department, 2024
Machine Learning (CS446)
Teaching Assistant, University of Illinois Urbana-Champaign, Computer Science Department, 2024